feat(ai-skills): default decision tree to v1 system mode (P4)

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Switch all 89 element tool recommendations in elements.md from v0 to v1
with theme: 'system' as the default. Add "Theme handling" section explaining
when to use system/light/dark/v0. v0 entries retained as "Byte-frozen escape
hatch" sub-entries for rare byte-parity requirements.

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packages/pen-ai-skills/skills/phases/generation/elements.md

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